Computer Specification and Installation of the mat2dcorr toolbox: Difference between pages
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__FORCETOC__ | |||
To download go to [http://www.peter-lasch.de/2dcorr/ http://www.peter-lasch.de/2dcorr/] | |||
== Required files / Software / OS == | |||
[[File:index-of-2dcorr.jpg|500px|thumb|Mat2Dcorr: index of http://www.peter-lasch.de/2dcorr]] | |||
'''Program Files''' of the mat2Dcorr toolbox: | |||
<ol> | |||
<li> mat2dcorr.m</li> | |||
<li> updcorrplt.m</li> | |||
<li> resiz2dfig.m</li> | |||
<li> readme.txt</li> | |||
</ol> | |||
'''Software''': | |||
<ol start="5"> | |||
<li> [https://www.mathworks.com Matlab] R2014a or newer</li> | |||
</ol> | |||
'''Operating Systems''': | |||
<ul> | |||
<li> Windows 10</li> | |||
<li> LINUX (Debian Stretch/Buster/Bullseye)</li> | |||
</ul> | |||
== Extra files (spectral data files) == | |||
<ol start="5"> | |||
<li> linescandata.mat - example data file in the trace (2D) data format, see also [[Matlab_Trace_Format| Matlab trace data format]] </li> | |||
<li> linescandata.xlsx - example data file in the trace (2D) data format (MS Excel) | |||
</li> | |||
<li> IR-cerebellum-100x100.mat - example data file in the hyperspectral imaging (HSI) data format (FT-IR spectra from hamster cerebellum), see also [[Matlab_Imaging_Format| Matlab imaging data format ]]</li> | |||
<li> IR-cerebellum-50x50.mat - example data (50 x 50 spectra, interpolated), Matlab imaging data format</li> | |||
<li> MALDI-cerebellum-100x100.mat - example data file (100 x 100 spectra) in the HSI data format (MALDI-TOF mass spectra from hamster cerebellum), Matlab imaging data format</li> | |||
<li> MALDI-cerebellum-50x50.mat - example data file (50 x 50 spectra, interpolated), Matlab imaging data format</li> | |||
<li> Raman-cerebellum-100x100.mat - example data file (100 x 100 spectra) in the HSI data format (MALDI-TOF mass spectra from hamster cerebellum), Matlab imaging data format</li> | |||
<li> Raman-cerebellum-50x50.mat - example data file (50 x 50 spectra, interpolated), Matlab imaging data format</li> | |||
<li> fftsyncro.mat - result file of 2D correlation analysis by the mat2dcorr toolbox using the FFT 2D-COS option, for details of the result file format refer also to the section [[Format_of_a_2D-COS_Result_File|format of a 2D-COS result file (Matlab)]]</li> | |||
<li> statssyncro.mat - result file of 2D correlation analysis by the mat2dcorr toolbox using the statistical 2D-COS option, for details of the result file format refer also to the section [[Format_of_a_2D-COS_Result_File|format of a 2D-COS result file (Matlab)]]</li> | |||
</ol> | |||
== Installation == | |||
* Download files 1.-4. + some test data (see above) and and copy them into one single directory, for example into a directory ''mat2dcos''. | |||
* Add then this directory to Matlab's search path. For this start Matlab and type<br> | |||
>> addpath('Mat2DcorrPath') | |||
at the Matlab command prompt, where ''Mat2DcorrPath'' denotes the full path where the the toolbox resides (i.e. ''mat2dcos'').<br> | |||
Example of Mat2DcorrPath: ''C:\Users\Tim\Documents\Matlab\mat2dcos'' | |||
* To start mat2Dcorr type<br> | |||
>> mat2dcorr | |||
at the Matlab prompt.<br> | |||
This will open two different windows: | |||
# A window entitled '2D correlation analysis ... ' which shows the 2D correlation spectrum and mean spectra obtained from the x- and y-spectral data | |||
# The 2D-COS control window (see screenshot below) | |||
[[File:2D-COS.jpg|800px|thumb|Mat2Dcorr: screenshot of the 2D control window (left) and the window '2D correlation | |||
analysis ... ' (right)]] |
Revision as of 15:32, 2 April 2023
To download go to http://www.peter-lasch.de/2dcorr/
Required files / Software / OS
Program Files of the mat2Dcorr toolbox:
- mat2dcorr.m
- updcorrplt.m
- resiz2dfig.m
- readme.txt
Software:
- Matlab R2014a or newer
Operating Systems:
- Windows 10
- LINUX (Debian Stretch/Buster/Bullseye)
Extra files (spectral data files)
- linescandata.mat - example data file in the trace (2D) data format, see also Matlab trace data format
- linescandata.xlsx - example data file in the trace (2D) data format (MS Excel)
- IR-cerebellum-100x100.mat - example data file in the hyperspectral imaging (HSI) data format (FT-IR spectra from hamster cerebellum), see also Matlab imaging data format
- IR-cerebellum-50x50.mat - example data (50 x 50 spectra, interpolated), Matlab imaging data format
- MALDI-cerebellum-100x100.mat - example data file (100 x 100 spectra) in the HSI data format (MALDI-TOF mass spectra from hamster cerebellum), Matlab imaging data format
- MALDI-cerebellum-50x50.mat - example data file (50 x 50 spectra, interpolated), Matlab imaging data format
- Raman-cerebellum-100x100.mat - example data file (100 x 100 spectra) in the HSI data format (MALDI-TOF mass spectra from hamster cerebellum), Matlab imaging data format
- Raman-cerebellum-50x50.mat - example data file (50 x 50 spectra, interpolated), Matlab imaging data format
- fftsyncro.mat - result file of 2D correlation analysis by the mat2dcorr toolbox using the FFT 2D-COS option, for details of the result file format refer also to the section format of a 2D-COS result file (Matlab)
- statssyncro.mat - result file of 2D correlation analysis by the mat2dcorr toolbox using the statistical 2D-COS option, for details of the result file format refer also to the section format of a 2D-COS result file (Matlab)
Installation
- Download files 1.-4. + some test data (see above) and and copy them into one single directory, for example into a directory mat2dcos.
- Add then this directory to Matlab's search path. For this start Matlab and type
>> addpath('Mat2DcorrPath')
at the Matlab command prompt, where Mat2DcorrPath denotes the full path where the the toolbox resides (i.e. mat2dcos).
Example of Mat2DcorrPath: C:\Users\Tim\Documents\Matlab\mat2dcos
- To start mat2Dcorr type
>> mat2dcorr
at the Matlab prompt.
This will open two different windows:
- A window entitled '2D correlation analysis ... ' which shows the 2D correlation spectrum and mean spectra obtained from the x- and y-spectral data
- The 2D-COS control window (see screenshot below)